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Uniprot protein corresponding nucleotide sequence

Started by jyt109bioinfo, Aug 26 2012 01:53 PM
protein nucleotide DNA uniprot swiss prot

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#1 jyt109bioinfo

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Posted 26 August 2012 - 01:53 PM

Hello there,
I am trying to find the corresponding gene sequence to the uniprot protein sequences. According the swiss-prot website, there are not corresponding nucleotide sequences to their protein since they have merged multiple isoform sequences together to make their 'canonical' sequences (LINK BELOW). Has anyone find a viable (preferably quick and easy) way around this problem?
Any help would be much appreciated Posted Image

http://www.uniprot.org/faq/35

#2 jpatrik67

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Posted 26 August 2012 - 04:58 PM

You could try to use tblastn, that will find nucleotide sequences using a protein sequence as a query.

http://blast.ncbi.nl...K_LOC=blasthome
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