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SNP in Masked Region

Started by Checkers, May 30 2012 12:16 PM

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#1 Checkers

Checkers

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Posted 30 May 2012 - 12:16 PM

Hi all,

I'm trying to genotype a SNP for which I have to design custom primers and probes. The problem with this SNP is that it is in the middle of a large area masked as non-specific using RepeatMasker. Is there any way to identify this SNP using qPCR, or even any other genotyping system?

Thanks for the help!
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