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bam file - extract first 20nt from 50bp Illumina reads??

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#1 dedee



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Posted 28 May 2012 - 05:30 AM

Hi all,

Please help :)
I've got DNAse-seq data, from a Solexa machine, from a collaborator. I have analysed ChIP-seq data before, just that I usually start from the .fastq files. bam to fast is not an issue, BUT the problem now is that, since this is from Dnase-Seq, only the first 20nt from the reads are usable. Just how do I strip the rest?

Many thanks!

Edited by dedee, 28 May 2012 - 05:32 AM.

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