Inmost sun, on 15 May 2012 - 02:22 AM, said:
Let´s say I have 3 groups of independent data sets (n=3), each group of sample size N=5;
for each group I can determine mean (X1,X2,X3) and standard deviation (SD1,SD2,SD3);
my question is: How to correctly determine the standard error of means (SEM) of the mean of the 3 means (X1-X3)? I think I have to take the SD of each group into account, but by which method?

My interpretation of this is that you are after the intergroup variation in which case you calculate the standard deviation of just the three means (remembering to use sample stdev, n-1=2). You would then use the pooled standard deviation as the within-group variation.
red_monkey, on 15 July 2012 - 09:03 AM, said:
So...3 samples/animals, 3 repeats each. If I want to summarise the whole lot, do I take the mean and SEM of the mean for each animal or the mean and SEM of all 9 repeats...or some other method?
Whereas this is asking for the global standard deviation; grouping all 9 repeats.