I'm looking for a promoter sequence for my gene in tomato plant. I have the complete genome, cDNA, and protein sequence of that gene. What database can I use to analyze my promoter sequence?
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toejam
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Posted 06 March 2012 - 03:54 PM
hi seed,
what i would do is to locate the cDNA in the genome and then extract ~ 2 kb upstream from that region, looking for promoter sequences. i'm not sure whether plantprom or planttfdb contains tomato sequences. hope that helps.
what i would do is to locate the cDNA in the genome and then extract ~ 2 kb upstream from that region, looking for promoter sequences. i'm not sure whether plantprom or planttfdb contains tomato sequences. hope that helps.
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