repeat masking of gene enriched genomic reads on 454 platform

Started by Krishan M. Rai, Dec 16 2011 07:58 AM

454 assembly repeat masking

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#1 Krishan M. Rai

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Posted 16 December 2011 - 07:58 AM

hi,

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i have sequenced gene enriched genomic reads on 454 platform. After removing reads of organeller genome, i want to assemble the filtered reads on gsAssembler. Being genomic reads, should i repeat mask it prior to assembly? Whether gsAssembler can assemble repeat masked reads?

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KM (India)

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