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repeat masking of gene enriched genomic reads on 454 platform

454 assembly repeat masking

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#1 Krishan M. Rai

Krishan M. Rai


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Posted 16 December 2011 - 07:58 AM



i have sequenced gene enriched genomic reads on 454 platform. After removing reads of organeller genome, i want to assemble the filtered reads on gsAssembler. Being genomic reads, should i repeat mask it prior to assembly? Whether gsAssembler can assemble repeat masked reads?


KM (India)


Also tagged with one or more of these keywords: 454, assembly, repeat masking

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