I'm new to PAML and phylogenetic analysis in general. I'm running a bunch of alignments through PAML to calculate dN/dS per branch and I need to give it a species tree but I'm not familiar with the parenthetical notation it requires. Can anyone help me out?
The species I'm using are:
Human, Chimp, Orangutan, Gorilla, Mouse, Rhesus Macaque, & Cow
PAML tree design
1 reply to this topic