Jump to content

  • Log in with Facebook Log in with Twitter Log in with Windows Live Log In with Google      Sign In   
  • Create Account

Submit your paper to J Biol Methods today!
Photo
- - - - -

Chromosomes and exons

chromosome exon

  • Please log in to reply
1 reply to this topic

#1 JoanManuel

JoanManuel

    member

  • Members
  • Pip
  • 2 posts
0
Neutral

Posted 14 November 2011 - 04:10 PM

Hi:
I have a newbie question, actually I want to make comparisons between full chromosomes. I have found that in ftp.ncbi.nih.gov/genomes/ there is a chromosomes list, but which one is the correct to download? I need the fasta files, for example for chromosome 2 it would be fine if I download the one that says hs_alt_HuRef_chr2.fa.gz? what does hs_alt stands for?
Also I suppose that if it is the complete sequence it contains the introns and exons from each chromosome, is there any site where I can download only the exons or the introns of each chromosome?
Thanks for your replies

#2 joy123

joy123

    Veteran

  • Active Members
  • PipPipPipPipPipPipPipPipPipPip
  • 105 posts
3
Neutral

Posted 16 November 2011 - 12:25 PM

I don;t know if Ensemble works. But you can try it. Good luck!Posted Image





Home - About - Terms of Service - Privacy - Contact Us

©1999-2013 Protocol Online, All rights reserved.