Warning: mb_substr_count() expects at most 3 parameters, 4 given in /home/protocol/public_html/forums/admin/sources/classes/text/parser/bbcode/defaults.php on line 1269

Warning: Cannot modify header information - headers already sent by (output started at /home/protocol/public_html/forums/admin/sources/classes/text/parser/bbcode/defaults.php:1269) in /home/protocol/public_html/forums/admin/sources/classes/output/formats/html/htmlOutput.php on line 110

Warning: Cannot modify header information - headers already sent by (output started at /home/protocol/public_html/forums/admin/sources/classes/text/parser/bbcode/defaults.php:1269) in /home/protocol/public_html/forums/admin/sources/classes/output/formats/html/htmlOutput.php on line 122

Warning: Cannot modify header information - headers already sent by (output started at /home/protocol/public_html/forums/admin/sources/classes/text/parser/bbcode/defaults.php:1269) in /home/protocol/public_html/forums/admin/sources/classes/output/formats/html/htmlOutput.php on line 123

Warning: Cannot modify header information - headers already sent by (output started at /home/protocol/public_html/forums/admin/sources/classes/text/parser/bbcode/defaults.php:1269) in /home/protocol/public_html/forums/admin/sources/classes/output/formats/html/htmlOutput.php on line 136

Warning: Cannot modify header information - headers already sent by (output started at /home/protocol/public_html/forums/admin/sources/classes/text/parser/bbcode/defaults.php:1269) in /home/protocol/public_html/forums/admin/sources/classes/output/formats/html/htmlOutput.php on line 137

Warning: Cannot modify header information - headers already sent by (output started at /home/protocol/public_html/forums/admin/sources/classes/text/parser/bbcode/defaults.php:1269) in /home/protocol/public_html/forums/admin/sources/classes/output/formats/html/htmlOutput.php on line 141
Software to construct a cladogram from a gel - Bioinformatics and Biostatistics - BioForum

Jump to content

  • Log in with Facebook Log in with Twitter Log in with Windows Live Log In with Google      Sign In   
  • Create Account

Submit your paper to J Biol Methods today!
Photo
- - - - -

Software to construct a cladogram from a gel

cladogram software ERIC

  • Please log in to reply
2 replies to this topic

#1 Reisboy

Reisboy

    member

  • Members
  • Pip
  • 3 posts
0
Neutral

Posted 17 October 2011 - 12:48 PM

hello
I've been asked (by my advisor) to analyze ERIC gels through a cladogram. Basically each strain we're analyzing has a band pattern and we have to group them by similarity. Can anybody help me? I've tried to look up a software but I have only found instructions to make cladograms by hand, which would take me too long.
Thanks !

#2 hobglobin

hobglobin

    Growing old is mandatory, growing up is optional...

  • Global Moderators
  • PipPipPipPipPipPipPipPipPipPip
  • 5,595 posts
116
Excellent

Posted 18 October 2011 - 08:46 AM

No idea what a ERIC gel is. But band patterns you can sum up for example as 0/1 sets (band there =1 band absent = 0) and then calculate distances/similarities between them with an appropriate program (e.g. Phylip/Arlequin/PAUP and others). Out of this similarity matrix make a tree using a fitting tree-estimating method (UPGMA/NJ/Parsimony...). Software is here PAUP, Phylip, Treeview and many others...
Here is a compendium of software.

One must presume that long and short arguments contribute to the same end. - Epicurus
...except casandra's that did belong to the funniest, most interesting and imaginative (or over-imaginative?) ones, I suppose.


#3 Reisboy

Reisboy

    member

  • Members
  • Pip
  • 3 posts
0
Neutral

Posted 18 October 2011 - 08:59 AM

Thanks! I'll try that!





Home - About - Terms of Service - Privacy - Contact Us

©1999-2013 Protocol Online, All rights reserved.