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Bioinformatic tools for novel miRNA target prediction

micro RNA Target prediction

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2 replies to this topic

#1 hamid

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Posted 10 September 2011 - 03:05 PM

Hi
I am looking for some means to have a hint about the targets of some unknown micro RNAs. Are there any bioinformatic tools that can predict the target of an unknown micro RNA? The micro RNA sequences in my hand are not related to known classes of miRNAs. My experimental organism is Drosophila. Any suggestions will be greatly appreciated

#2 NicoBxl

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Posted 23 September 2011 - 12:10 AM

miRanda or targetscan

#3 pcrman

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Posted 21 May 2013 - 11:29 PM

You can use miRanda to predict targets for a unknown miRNA. It allows you to have two input files one containing miR sequences and the other mRNA sequences. miRanda can be downloaded here http://www.microrna....getDownloads.do





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