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BLASTing a limited database


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#1 PandaCreamPuff

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Posted 10 May 2011 - 04:55 AM

Hi all

I have nucleotide sequences which I would like to BLAST, however I would not like to BLAST the whole database, instead just a selected series of sequences. I would like to know how to get around that. Can I limit my search to only include some accession numbers?

Thank you so much

#2 NicoBxl

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Posted 19 May 2011 - 12:03 AM

You've to create an another DB with your subset sequences ( with formatdb )

and then blast your sequences against




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