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rendering position-weight matrixs into logos

Started by microphobe, Mar 02 2011 12:32 AM

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#1 microphobe

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Posted 02 March 2011 - 12:32 AM

Hi all,

Does anyone have some good software for rendering a position-weight matrix into an image? I just have a PMW, not an alignment... thanks.

#2 CHODAR

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Posted 19 May 2011 - 07:10 PM

View Postmicrophobe, on 02 March 2011 - 12:32 AM, said:

Hi all,

Does anyone have some good software for rendering a position-weight matrix into an image? I just have a PMW, not an alignment... thanks.

You can use seqLogo package from R / Bioconductor.

Regards,
Christian.
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