Hi all,
It is my first time using bioinformatics to analyze protein data. My question is fairly simple (I hope) I have a protein of interest, which I can find through NCBI, I want to use a program to align this FASTA sequence bewteen four of five organisms to look for homology.
What program should I use and how do I go about putting them all on one page and seeing how much of a percent similarity there is between them.
Thank you all
dbiscoc
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Legendary Graduate Beggar
Posted 25 October 2010 - 05:48 PM
If I understand correctly that all you need is a simple alignment software, try ClustalX.
http://www.clustal.org/
direct download link
http://www.clustal.o...wnload/current/
http://www.clustal.org/
direct download link
http://www.clustal.o...wnload/current/
Expecting the world to treat you fairly because you are a good person is like expecting the lion not to attack you because you are a vegetarian.
..."best of our knowledge, as far as we know this had never been reported before, though I can't possible read all the published journals on earth, but by perform thorough search in google, the keywords did not match any documents"...
"what doesn’t kill you, makes you stronger"---Goddess Casandra reminds me to be strong
"It's all just DNA. Do it."---phage434
..."best of our knowledge, as far as we know this had never been reported before, though I can't possible read all the published journals on earth, but by perform thorough search in google, the keywords did not match any documents"...
"what doesn’t kill you, makes you stronger"---Goddess Casandra reminds me to be strong
"It's all just DNA. Do it."---phage434
