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Looking for a particular motif within proteins


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#1 cardosopedro

cardosopedro

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Posted 10 April 2010 - 06:15 AM

Hi.

Can you search a database for a particular sequence motif? For instance, I want to search a protein database for proteins that contain the motif "RKDA". Is there any way to do this?

Or the other way around... Is it possible to look for a specific motif within a protein sequence? I know you can do this in web tools like Prosite or Pfam... But what about when your motif is not defined in any of these databases?


Thanks in advance.




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