evolutionarily conserved RNA secondary structures in multiple sequence alignment
Posted 23 January 2010 - 02:32 AM
I have an alignment of RNA sequences of the same region in mRNA from multiple organisms and I want to know is there any structure conservation. I have a experimental data of this region in human RNA so it will be grate to look on this region in other organisms
Can You help me to choose right way to do this?
Posted 24 January 2010 - 09:54 PM
Edited by Felipillo, 24 January 2010 - 09:54 PM.
Posted 26 January 2010 - 09:02 AM
ie considering things such as species codon usage, type of alignment to perform, and so on.