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DNA denaturing PAGE


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#1 Vicsb

Vicsb

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Posted 07 January 2010 - 12:21 PM

Hi all,
I want to run single strand DNA (the products of primer extension experiments) in a denaturing polyacrylamide gel using a miniprotean system (Biorad) (I am trying to avoid using a sequencing gel). The size of the DNAs is 60 and 160 nucleotides. I could adjust the concentration of acrylamide to resolve these fragments, but I am worried about the temperature to keep the denaturing conditions.  Does anyone have a protocol to do this or some advice?
Thanks in advance





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