Does any body know such software that is freely available online. I was looking it up over the last week. But all the software I found only accept distance matrix, such as famous Phylip program. Does any body has a clue?
Many thanks!
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Software to construct phylogenic tree by using similarity matrix as inpu?
Started by hothot, Nov 20 2009 09:03 PM
2 replies to this topic
#2
hobglobin
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Posted 21 November 2009 - 03:08 AM
hothot, on Nov 21 2009, 06:03 AM, said:
Does any body know such software that is freely available online. I was looking it up over the last week. But all the software I found only accept distance matrix, such as famous Phylip program. Does any body has a clue?
Many thanks!
Many thanks!
Most software that accept a distance matrix as input should also accept a similarity matrix, as it the same concept only vice versa...MEGA, Arlequin, Phylip should do the job...
One must presume that long and short arguments contribute to the same end. - Epicurus
...except casandra's that belong to the funniest, most interesting and imaginative (or over-imaginative?) ones, I suppose.
#3
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Posted 21 November 2009 - 01:40 PM
I tried phylip but it only accepts distance matrix.
My similarity is measured in terms of Z-score, but I don't what's the best way to convert it to a distance matrix, p-value maybe a choice, but I'm not quite sure.
My similarity is measured in terms of Z-score, but I don't what's the best way to convert it to a distance matrix, p-value maybe a choice, but I'm not quite sure.
