5 replies to this topic

[Tomato]

Hello,
I am having an issue with my 100bp DNA ladder on my Agarose Gel (1.5%). The heavier bands of the ladder (500 and up) do not separate and leave a blurry mess. I moved the ladder to the middle of the gel and reduced the concentration by half. The ladder got slightly clearer but still not readable. I need to be able to differentiate between 750bp and 1000 bp for my PCR product. I cast and run the gel in 0.5X TBE and I don't reuse the buffer more than 2 or 3 times.  I attached a pic of a gel with the ladder problem.
I am very new at this so I would appreciate any suggestions you might have.
Thanks

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[Prep!]

well i think u are not giving it enough time to run!!!
from your pictire its clear that the gel is just half of it.. try runnign the entire gel.. i bet my money on it u l get the required resolution!!!
higher mol wt molecules take longer time to resolve owing to the steric hinderences too!!

[jiajia1987]

I usually use 1.0% agarose, you can just stick to this. How long do you run your samples for? And at what voltage? Try 80V or 100V for 40 to 50mins.

[Adrian K]

I run my gel the same condition you do. However, is very obvious that your gel is too short...i attached my ladder for your review.
I run 140V for 30 minutes.

Hope this helps you.

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Edited by adrian kohsf, 09 November 2009 - 04:25 AM.

[tomatoNC]

Thanks very much for the advice. I used a longer gel and running time and the resolution was much better

[bochum]

some time it happens when the dna marker gets older because of degradation