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Bacterial promoter prediction


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#1 chn09

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Posted 22 September 2009 - 01:20 AM

Hello all,
Does anyone know to predict bacterial promoters from a gene sequence?. If at all, what is the websites that help in bacterial promoter prediction?

#2 fishdoc

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Posted 22 September 2009 - 03:45 AM

Hello all,
Does anyone know to predict bacterial promoters from a gene sequence?. If at all, what is the websites that help in bacterial promoter prediction?



bprom from softberry (http://linux1.softbe...com/berry.phtml), or just by looking for the best -35 and -10 consensus sequences near the start of the gene.

#3 Biointelligence

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Posted 24 October 2009 - 03:21 AM

Hello all,
Does anyone know to predict bacterial promoters from a gene sequence?. If at all, what is the websites that help in bacterial promoter prediction?


Here are some links which might be useful:
http://molbiol-tools.ca/Promoters.htm
http://www.cbs.dtu.d...vices/Promoter/
http://bioportal.wei.../promoters.html

Cheers
Biointelligence - All about Bioinformatics :lol:




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