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ChIP and Next Generation Sequencing
Please also visit archived discussions on the topic of ChIP (1999-2009) and ChIP (2009-Present), sonication issues (sonication 1 and sonication 2) and ChIP-Seq in the ChIP Forum
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Shearing (sonication) problem for ChIPStarted by timjim, 10 Jun 2009  sonication, shearing, chip
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How to analyze ChIP PCR dataStarted by krystle, 13 Feb 2011 ChIP, data analysis, result and 1 more...
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Purify ChIP DNA using Qiagen spin filterStarted by epigenetics, 30 Nov 2009 |
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What do people use as sequencing control in ChIP-SeqStarted by TracyDuke, 28 Jul 2009 |
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Sonication Vs MNaseStarted by Dukey, 14 Apr 2011 |
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chromatin shearing using Bioruptor sonicatorStarted by thammiey, 14 Feb 2011 |
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help regarding ChIP assay after sonication with bioruptorStarted by varma_ran, 07 Dec 2010 |
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Samples for ChIP-seq library preparationStarted by doudou30, 22 Apr 2010 |
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% INPUT - ChIPStarted by dna_nerd, 05 Feb 2009 |
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Is my antibody ChIP grade?Started by nigelcr, 10 Mar 2010 |
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ChIP Foaming and other woes (archived)Started by bioforum, 31 Jan 2009 |
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ChIP - Foaming in sonication and other woesStarted by badcell, 27 Jan 2005 |
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How to analyse ChIP-seq dataStarted by tancha, 28 Nov 2013 chip-seq
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ChIP- Unwanted signal from intergenic regionStarted by belew, 08 Oct 2013 ChIP, Intergenic and 1 more...
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Comprehensive List of transcription factor binding site databases based on ChIP-Started by zhxq09, 18 Nov 2013 chip, ChIP-Seq, NGS, sequencing and 1 more...
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Barcodes with Illumina MiSeqStarted by LabNerd, 22 Oct 2013 |
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NGS target enrichment kitsStarted by moerae, 09 Oct 2013 |
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ChIP problem - using cells as a negative controlStarted by uhsiracu, 05 Jul 2013 |
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q value in rna seqStarted by harry348, 06 Sep 2013 |
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Breaking nuclear membrane with needle is sufficient (no sonicator nor dounce)?Started by crom80, 03 Oct 2013 |
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Which one is better: 40 kHz vs 20 KHz sonicator?Started by memari, 25 Sep 2013 40 kHz, 20 KHz, sonicator
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ChIP-PCR worked, ChIP-seq didn'tStarted by roelq, 01 Sep 2013 |
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Illumina TruSeq ChIP adaptersStarted by crockel, 19 Aug 2013 |
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Losing cells during fixationStarted by Aliaksei Holik, 06 Aug 2013 |
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proper controls for tagged proteinsStarted by labstud4, 15 Aug 2013 |
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