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Breeden Lab, mRNA purification 
mRNA Purification
I. Prepare oligo-dT cellulose
- use 40 mg oligo-dT cellulose / 1 mg total RNA
- swell oligo dT-cellulose in elution buffer
- wash oligo dT-cellulose 4 x with elution buffer (30 sec. full speed spin in between)
- equilibrate oligo-dT cellulose with 2 to 3 washing steps using 1x binding buffer
II. mRNA purification
- bring 1 mg total RNA with H2O to 600 µl
- incubate 4 min at 65 °C
- add 600 µl 2x binding buffer
- add to 40 mg 1x binding buffer equilibrated oligo-dT cellulose
- incubate 15 min at RT on a rolling incubator or vortex several times in between
- spin oligo-dT cellulose down, discard supernatant
- wash 2 x with 1x binding buffer
- wash 2 x with wash buffer
- elute with 250 µl elution buffer at 37 °C for 5 min
- spin and keep supernatant (for second round of purification or precipitation)
- elute oligo-dT cellulose again with 250 µl elution buffer
- spin and keep supernatant (for second round of purification or precipitation)
- combine eluate and add H2O to 600 µl
- repeat mRNA purification by starting again with 4 min incubation at 65 °C
III. Recover mRNA
- add 50 µl 4 M NaCl and precipitate with 2 vol. cold EtOH
- incubate 1 h at -20 °C
- spin 10 min full speed, wash with 70 % EtOH, air dry and dissolve in 20 µl H2O
- read A260 of 1 µl (100 to 250 fold diluted)
- run 1 µg ( and 10 µg total RNA as comparison) on a 1.2 % agarose Formaldehyde gel
recovery = 1-2 % of the total RNA (10-20 µg mRNA / 2 mg total RNA)
Buffers:
[all buffers should be made with DEPC treated/autoclaved components!]
oligo dT cellulose (type7, Pharmacia)
2 x binding buffer:
1 M NaCl; 20 mM Tris pH 7.5; 2 mM EDTA; 0.1 % SDS
[50 ml: 12.5 ml 4 M NaCl; 1 ml 1 M Tris; 200 µl 0.5 M EDTA; 500 µl 10 % SDS]
1 x binding buffer:
0.5 M NaCl; 10 mM Tris pH 7.5; 1 mM EDTA; 0.05 % SDS
[50 ml: 6.25 ml 4 M NaCl; 500 µl 1 M Tris; 100 µl 0.5 M EDTA; 250 µl 10 % SDS]
wash buffer:
0.2 M NaCl; 10 mM Tris pH 7.5; 1 mM EDTA; 0.05 % SDS
[50 ml: 2.5 ml 4 M NaCl; 500 µl 1 M Tris; 100 µl 0.5 M EDTA; 250 µl 10 % SDS]
elution buffer:
10 mM Tris pH 7.5; 1 mM EDTA; 0.05 % SDS
[50 ml: 500 µl 1 M Tris; 100 µl 0.5 M EDTA; 250 µl 10 % SDS]