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GOrilla - a tool for identifying enriched GO terms

   GORILLA

     Gene Ontology enRIchment anaLysis and visuaLizAtion  tool

      

GOrilla is a tool for identifying and visualizing enriched GO terms in ranked lists of genes.
It can be run in one of two modes:

  1. Searching for enriched GO terms that appear densely at the top of a ranked list of genes or
  2. Searching for enriched GO terms in a target list of genes compared to a background list of genes.
For further details see References.

Running example        Usage instructions         GOrilla News(Updated Feb 7th 2010)         References

Step 1: Choose organism

Step 2: Choose running mode

Single ranked list of genes       Two unranked lists of genes (target and background lists)   

Step 3: Paste a ranked list of gene/protein names     

Names should be separated by an <ENTER>. The preferred format is gene symbol. Other supported formats are: gene and protein RefSeq, Uniprot, Unigene and Ensembl. Use WebGestalt for conversion from other identifier formats.
Target set:
Or upload a file:

Background set:
Or upload a file:

Step 4: Choose an ontology

Process       Function      Component    All New!   


 Advanced parameters

    P-value threshold:  

    Output results in Microsoft Excel format

    Output unresolved and duplicate genes

    Run GOrilla in fast mode


 References

    If you choose to use this application please cite:


Graphics are generated using Graphviz.

Components of the GOrilla system were designed as part of the European Union FP6 funded Multi Knowledge Project.

http://www.multiknowledge.org/

Multi Knowledge   

Creating New Knowledge In Networks of Medical Research


Please send your comments, suggestions and bug reports to Roy Navon at: Roy Navon
For questions regarding your results, please include a link to your results page.


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