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PlasMapper
 

PlasMapper Version 2.0

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The PlasMapper server automatically generates and annotates plasmid maps using only the plasmid DNA sequence as input. Plasmid sequences up to 20,000 bp may be annotated and displayed. Plasmid figures may be rendered in PNG, JPG, SVG or SVGZ format. PlasMapper supports an extensive array of display options.

Download PlasMapper Source

Please cite the following: Xiaoli Dong, Paul Stothard, Ian J. Forsythe, and David S. Wishart "PlasMapper: a web server for drawing and auto-annotating plasmid maps" Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W660-4.
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For additional information on how to run PlasMapper, click
Select desired DNA sequence file  (FASTA format only)

OR Select a plasmid based on supplier

OR paste the DNA sequence into the text window below  (FASTA fomat only)

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Feature Options:
  Replication Origin(s)
  Promoter(s)
  Terminator(s)
  Selectable Marker(s)
  Regulatory Sequence(s)
  Affinity Tag(s)
  Miscellaneous Feature(s)
  Reporter Gene(s)
  Restriction site(s)
(Use common enzyme set to annotate sequence)
  Unique sites
  Unique sites from >= 4 cutters
  Unique sites from >= 6 cutters
  All sites
  All sites from >= 4 cutters
  All sites from >= 6 cutters
 
(Use all enzyme set to annotate sequence)
  Unique sites
  Unique sites from >= 4 cutters
  Unique sites from >= 6 cutters
  All sites
  All sites from >= 4 cutters
  All sites from >= 6 cutters
Display ORFs that are at least   codons long on the
   Forward Strand
   Reverse Strand

User Defined Features:
Feature1 Name Start  Strand  
Category Stop  
Feature2 Name Start  Strand  
Category Stop  
Feature3 Name Start  Strand  
Category Stop  
Feature4 Name Start  Strand  
Category Stop  
Feature5 Name Start  Strand  
Category Stop  
Feature6 Name Start  Strand  
Category Stop  

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Plasmid Map Graphic Display Options:
Color SchemeRegularInverse
ShadingOn Off
Label ColorsOnOff
Label BoxesOnOff
LabelsOnOff
Inner LabelsOnOff
LegendOnOff
ArrowsOnOff
Tick MarksOnOff
 
Title
Display comment
Image format
Image Size
Backbone Thickness
Arc Thickness
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Problems? Questions? Suggestions? Please contact Canadian Bioinformatics Help Desk
Funding for this project was provided by    and

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