This is a cached page for the URL ( To see the most recent version of this page, please click here.
Protocol Online is not affiliated with the authors of this page nor responsible for its content.
About Cache
Web interface to Exact Sequence and Pattern Search

Annotation Tools

Blast GBrowse Short Sequence Search Precomputed Blast Results Download Files

Exact Sequence and Pattern Search

Source Sequence Type  :  
Target Sequence/Pattern:  
Target Sequence/Pattern Examples:
    1. ATCGAT -- exact match
    2. ATCNNNNNNGAT -- There can be 6 mismatches between 'ATC' and 'GAT'
    3.ATC[4:6]GAT -- [4:6] means there may be 4, 5 or 6 mismatches between 'ATC' and 'GAT'
        more examples...
Mismatch Parameters:
    Maximum Mismatches per Segment: 
    Maximum Total Mismatches :            
Source Sequence : ( )
    If 'from database', please select from genome database:  
    If 'input', please input the sequence in FASTA format:
Output Alignment:
    Please specify the number of bases before and after the match range:  (chars)


Shulei Sun
Scientific Computing Professional Associate  []

Dr. Mary Ann Moran
Research Professor Department of Marine Sciences  []


University of Georgia
Department of Marine Sciences
Contact Us


This material is based upon work supported by the National Science Foundation under Grant No. 0315200.

Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s)
and do not necessarily reflect the views of the National Science Foundation.