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Web interface to Exact Sequence and Pattern Search
 

Annotation Tools
Blast GBrowse Short Sequence Search Precomputed Blast Results Download Files
 

Exact Sequence and Pattern Search

Source Sequence Type  :  
Target Sequence/Pattern:  
Target Sequence/Pattern Examples:
    1. ATCGAT -- exact match
    2. ATCNNNNNNGAT -- There can be 6 mismatches between 'ATC' and 'GAT'
    3.ATC[4:6]GAT -- [4:6] means there may be 4, 5 or 6 mismatches between 'ATC' and 'GAT'
        more examples...
Mismatch Parameters:
    Maximum Mismatches per Segment: 
    Maximum Total Mismatches :            
Source Sequence : ( )
    If 'from database', please select from genome database:  
    If 'input', please input the sequence in FASTA format:
    
Output Alignment:
    Please specify the number of bases before and after the match range:  (chars)

 

Shulei Sun
Scientific Computing Professional Associate  [shulei@uga.edu]

Dr. Mary Ann Moran
Research Professor Department of Marine Sciences  [mmoran@uga.edu]
 

University of Georgia
Department of Marine Sciences
Contact Us

  

This material is based upon work supported by the National Science Foundation under Grant No. 0315200.

Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s)
and do not necessarily reflect the views of the National Science Foundation.