TFBIND Please input your sequence in FASTA format, e.g.
TFBIND : Software for searching transcription factor binding sites (including TATA boxes, GC boxes, CCAAT boxes, transcription start sites (TSS)). This tool uses weight matrix in transcription factor database TRANSFAC R.3.4 developed by Dr. Wingender et al, and the cut-offs originally estimated by our research.
NO LICENSE REQUIRED.
If you use our tool or cut-offs, could you please cite our paper:
- T.Tsunoda, and T.Takagi.
Estimating Transcription Factor Bindability on DNA.
BIOINFORMATICS, Vol.15, No.7/8, pp.622-630, 1999.
About the technical issue, contact to:
Dr. Tatsuhiko TSUNODA
Ph.D.(Medicine) & Ph.D.(Eng.)
Laboratory Head, SNP Research Center, RIKEN
1-7-22, Suehiro, Tsurumi, Yokohama, 230-0045, JAPAN