BioForum Archieves Search Results for 'promoter prediction'

Search results for '(promoter or promote or promoted or promoting or promotion or promotes or promotive or promotions or promoters) and (prediction or predictions)'

Documents 1 - 10 of 15 matches.

Bacterial promoter prediction - Bioinformatics and Biostatistics: Bacterial promoter prediction - (Sep/22/2009 ) Hello all, Does anyone know to predict bacterial promoters from a gene sequence?. If at all, what is the websites that help in bacterial promoter prediction? -chn09- chn09 on Sep 22 2009, 04:20 AM said:Hello all, Does anyone know to predict bacterial ...
http://www.protocol-online.org/biology-forums-2/posts/10415.html 12/10/12, 11343 bytes

prediction of transcription factor binding sites - Molecular Biology: prediction of transcription factor binding sites - which strand predictions are more important (Apr/12/2006 ) when i used certain softwares available on the net like TESS and Matinspector 2.0 the results display transcription factor binding sites in the positive as well as the minus strand acording ...
http://www.protocol-online.org/biology-forums/posts/15514.html 02/01/09, 9259 bytes

TF not in the TRANSFAC database. What now? - Bioinformatics and Biostatistics: ... (Apr/09/2010 ) Hi, Oddly enough I cannot find the important and highly topical transcription factor in the TRANSFAC database. I want to perform TFBS prediction and want to make sure NANOG is included in the results. I have run a few gene promoters which are experimentally proven to be targeted by NANOG ...
http://www.protocol-online.org/biology-forums-2/posts/14170.html 12/10/12, 10322 bytes

functional analysis of intron mutations - Molecular Biology: ... assay for functional analysis of intron mutation - I need to find out if intron mutation has influence on splicing. I know there are some assays for promoter mutation (luciferase reporter) and don´t know if it possible to use it for intron mutation. Thanks! -krst- hi, I have done the assays for ...
http://www.protocol-online.org/biology-forums-2/posts/12006.html 12/10/12, 12799 bytes

short 3'UTR - siRNA, microRNA and RNAi: ... a microRNA for my gene of interest. However, the 3'UTR is only 31 bp long and the three programs, targetscan, pictar and miranda yeild no predictions. Does this mean that this gene may not be regulated by microRNA? Thanks -SF_HK- It has been shown miRNAs do not only target 3'UTR, in some cases ...
http://www.protocol-online.org/biology-forums-2/posts/14262.html 12/10/12, 12915 bytes

Promoters - Molecular Biology: Promoters - How do you locate promoters (Jun/09/2010 ) Hi all, I'm looking for a promoter for MYH9 and am having a hard time doing so. Does anyone know of any promoter prediction software, or can help me by explaining what I'm looking for? Thanks so much. -MPdev- MPdev on Jun 9 2010, 05&#58 ...
http://www.protocol-online.org/biology-forums-2/posts/15321.html 12/10/12, 11873 bytes

promoter analysis - Bioinformatics and Biostatistics: promoter analysis - what is the best tools for promoter detection and analysis (Nov/02/2009 ) what is the best tools for promoter detection and analysis? -hazrina- hazrina on Nov 3 2009, 12:35 AM said:what is the best tools for promoter detection and analysis? Hi I prefer using SCOPE and Promoter ...
http://www.protocol-online.org/biology-forums-2/posts/11312.html 12/10/12, 10165 bytes

Transcription factor searching web site - Epigenetics: ... factor searching web site - (May/10/2010 ) i use some website to predict which Transcription factor can bind to my interesting gene's promoter. i need some help that which website can provide more reliable information about the prediction of TF on promoter. thanks a lot len :( -sunlen- You can find ...
http://www.protocol-online.org/biology-forums-2/posts/14767.html 12/10/12, 10329 bytes

How to find the promoter - Epigenetics: How to find the promoter - (Oct/02/2009 ) I want to do methylation specific PCR. At first, I need to search the gene's promoter to design the probe. I find the mRNA sequence in NCBI, then the DNA sequence. Interestedly, the mRNA sequence is just located in the origination of the DNA sequence. Usually ...
http://www.protocol-online.org/biology-forums-2/posts/10641.html 12/10/12, 25329 bytes

promoter search - Bioinformatics and Biostatistics: promoter search - (Jun/02/2006 ) Pages: Previous 1 2 I got another question. Once I found the promoter region (putative), how to know which transcription factors bind to that region? Any help? Thanks a lot! -aleruiz- Hi alruiz, some time ago I use the Promter Scan algorithm of Dr. Dan Presitge ...
http://www.protocol-online.org/biology-forums/posts/16935more1.html 02/01/09, 9424 bytes

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