2008 )

http://genenformics.com/download.html

Find genomic coordinate for exon/intron of a set of EntrezGene(s)
DESCRIPTION

Application find genomic coordinate for exon/intron for a set of GeneIds

USAGE

GeneSplicer [-h] [-help] [-logfile File_Name] [-conffile File_Name] [-version] [-dryrun] <ids>

REQUIRED ARGUMENTS

ids <String>
string of Entrez GeneId separated by comma(,)

EXAMPLE

GeneSplicer.exe 28511,246760,837084

28511 NKIRAS2 (Homo sapiens) NFKB inhibitor interacting Ras-like 2 NM_001001349.1 Exon 1 NC_000017.9 37422564 37423170 + 607
28511 NKIRAS2 (Homo sapiens) NFKB inhibitor interacting Ras-like 2 NM_001001349.1 Intron 1 NC_000017.9 37423171 37427107 + 3937
28511 NKIRAS2 (Homo sapiens) NFKB inhibitor interacting Ras-like 2 NM_001001349.1 Exon 2 NC_000017.9 37427108 37427215 + 108
28511 NKIRAS2 (Homo sapiens) NFKB inhibitor interacting Ras-like 2 NM_001001349.1 Intron 2 NC_000017.9 37427216 37427942 + 727
...

837084 RTM1 (Arabidopsis thaliana) NM_100456.2 Exon 1 NC_003070.6 1724233 1724485 - 253
837084 RTM1 (Arabidopsis thaliana) NM_100456.2 Intron 1 NC_003070.6 1724114 1724232 - 119
837084 RTM1 (Arabidopsis thaliana) NM_100456.2 Exon 2 NC_003070.6 1723733 1724113 - 381

-genenformics-

Is this a command-line application for windows?

-dalloliogm-

QUOTE (dalloliogm @ Jun 4 2008, 08:07 AM)

Is this a command-line application for windows?

We have command applications for both Windows and Cygwin. Linux version is available upon request.

-genenformics-